Reviews
Description
1. Studying Seed Microbiomes
Birgit Wassermann, Daria Rybakova, Eveline Adam, Christin Zachow, Maria Bernhard, Maria Müller, Riccardo Mancinelli, and Gabriele Berg
2. Sampling Microbiomes Associated with Different Plant Compartments
Henry W. G. Birt, Anthony B. Pattison, and Paul G. Dennis
3. Sampling of Bacteria Associated with Plant Vascular Tissues
Anthony J. Young
4. Sampling of Plant Material to Study Endophytes in Small, Large and Woody Plants
Jed Calvert
5. Preparation of Samples for Characterization of Arbuscular Mycorrhizal Fungi
Alberto Guillén
6. Culture-based Methods for Studying the Bacterial Root Microbiome of Wheat
Rebekah J. Robinson, Vanessa N. Kavamura, Penny R. Hirsch, Ian M. Clark, and Tim H. Mauchline
7. Fast Screening of Bacteria for Plant Growth Promoting Traits
Bruna Durante Batista, Maria LetÃcia Bonatelli, and Maria Carolina Quecine
8. Protists in the Plant Microbiome - An Untapped Field Of Research
Kenneth Dumack and Michael Bonkowski
9. Plant-associated Fungi: Methods for Taxonomy, Diversity, and Bioactive Secondary Metabolite Bioprospecting
Mariana Costa Ferreira, Camila Rodrigues de Carvalho, Marina Bahia, Débora Luiza Costa Barreto, Rafaela Nogueira Azevedo, Betania Barros Cota, Carlos Leomar Zani, Ana Raquel de Oliveira Santos, Carlos Augusto Rosa, and Luiz Henrique Rosa10. Extraction and Purification of DNA from Wood at Various Stages of Decay for Metabarcoding of Wood-Associated Fungi
Jeff R. Powell, Michaela Blyton, Brad Oberle, Gillian L. Powell, Jessica Rigg, Darcy Young, and Amy E. Zanne
11. Peptide Nucleic Acid (PNA) Clamps to Reduce Co-Amplification of Plant DNA during PCR Amplification of 16S rRNA Genes from Endophytic Bacteria
Akitomo Kawasaki and Peter R. Ryan
12. Quantification of Ammonia Oxidizing Bacterial Abundances in Environmental Samples by quantitative-PCR
Aimeric Blaud, Abadie Maïder, and Ian M. Clark
13. Removing Host-derived DNA Sequences from Microbial Metagenomes via Mapping to Reference Genomes
Yun Kit Yeoh
14. Inference and Analysis of SPIEC-EASI Microbiome Networks
Henry W. G. Birt and Paul G. Dennis
15. Gene Knockout of Beneficial Plant-associated Bacillus spp. using the CRISPR-Cas9 Double Plasmid System
Everthon Fernandes Figueredo and Maria Carolina Quecine
16. Sample Preparation for Culture-Independent Profiling and Isolation of Phyllosphere Bacteria to Identify Potential Biopesticides
Eugenie Singh, Peer M. Schenk, and Lilia C. Carvalhais
17. Soil-borne Legacies of Disease in Arabidopsis thaliana
Gilles Vismans, Jelle Spooren, Corné M.J. Pieterse, Peter A.H.M. Bakker, aned Roeland L. Berendsen
18. Bioactive Streptomycetes from Isolation to Applications: A Tasmanian Potato Farm Example
Nina R. Ashfield-Crook, Zachary Woodward, Martin Soust, and D. İpek Kurtböke
19. Methods to Identify Soil Microbial Bioindicators of Sustainable Management of Bioenergy Crops
Acacio Aparecido Navarrete, Rita de Cássia Bonassi, Juliana Heloisa Pinê Américo-Pinheiro, Gisele Herbst Vazquez, Lucas William Mendes, Elisângela de Souza Loureiro, Eiko Eurya Kuramae, and Siu Mui Tsai
20. Functional Soil Biological Measurements to Support Healthy Soils
Hazel R. Lapis-Gaza and Anthony B. Pattison
21. A
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1. Studying Seed Microbiomes
Birgit Wassermann, Daria Rybakova, Eveline Adam, Christin Zachow, Maria Bernhard, Maria Müller, Riccardo Mancinelli, and Gabriele Berg
2. Sampling Microbiomes Associated with Different Plant Compartments
Henry W. G. Birt, Anthony B. Pattison, and Paul G. Dennis
3. Sampling of Bacteria Associated with Plant Vascular Tissues
Anthony J. Young
4. Sampling of Plant Material to Study Endophytes in Small, Large and Woody Plants
Jed Calvert
5. Preparation of Samples for Characterization of Arbuscular Mycorrhizal Fungi
Alberto Guillén
6. Culture-based Methods for Studying the Bacterial Root Microbiome of Wheat
Rebekah J. Robinson, Vanessa N. Kavamura, Penny R. Hirsch, Ian M. Clark, and Tim H. Mauchline
7. Fast Screening of Bacteria for Plant Growth Promoting Traits
Bruna Durante Batista, Maria LetÃcia Bonatelli, and Maria Carolina Quecine
8. Protists in the Plant Microbiome - An Untapped Field Of Research
Kenneth Dumack and Michael Bonkowski
9. Plant-associated Fungi: Methods for Taxonomy, Diversity, and Bioactive Secondary Metabolite Bioprospecting
Mariana Costa Ferreira, Camila Rodrigues de Carvalho, Marina Bahia, Débora Luiza Costa Barreto, Rafaela Nogueira Azevedo, Betania Barros Cota, Carlos Leomar Zani, Ana Raquel de Oliveira Santos, Carlos Augusto Rosa, and Luiz Henrique Rosa10. Extraction and Purification of DNA from Wood at Various Stages of Decay for Metabarcoding of Wood-Associated Fungi
Jeff R. Powell, Michaela Blyton, Brad Oberle, Gillian L. Powell, Jessica Rigg, Darcy Young, and Amy E. Zanne
11. Peptide Nucleic Acid (PNA) Clamps to Reduce Co-Amplification of Plant DNA during PCR Amplification of 16S rRNA Genes from Endophytic Bacteria
Akitomo Kawasaki and Peter R. Ryan
12. Quantification of Ammonia Oxidizing Bacterial Abundances in Environmental Samples by quantitative-PCR
Aimeric Blaud, Abadie Maïder, and Ian M. Clark
13. Removing Host-derived DNA Sequences from Microbial Metagenomes via Mapping to Reference Genomes
Yun Kit Yeoh
14. Inference and Analysis of SPIEC-EASI Microbiome Networks
Henry W. G. Birt and Paul G. Dennis
15. Gene Knockout of Beneficial Plant-associated Bacillus spp. using the CRISPR-Cas9 Double Plasmid System
Everthon Fernandes Figueredo and Maria Carolina Quecine
16. Sample Preparation for Culture-Independent Profiling and Isolation of Phyllosphere Bacteria to Identify Potential Biopesticides
Eugenie Singh, Peer M. Schenk, and Lilia C. Carvalhais
17. Soil-borne Legacies of Disease in Arabidopsis thaliana
Gilles Vismans, Jelle Spooren, Corné M.J. Pieterse, Peter A.H.M. Bakker, aned Roeland L. Berendsen
18. Bioactive Streptomycetes from Isolation to Applications: A Tasmanian Potato Farm Example
Nina R. Ashfield-Crook, Zachary Woodward, Martin Soust, and D. İpek Kurtböke
19. Methods to Identify Soil Microbial Bioindicators of Sustainable Management of Bioenergy Crops
Acacio Aparecido Navarrete, Rita de Cássia Bonassi, Juliana Heloisa Pinê Américo-Pinheiro, Gisele Herbst Vazquez, Lucas William Mendes, Elisângela de Souza Loureiro, Eiko Eurya Kuramae, and Siu Mui Tsai
20. Functional Soil Biological Measurements to Support Healthy Soils
Hazel R. Lapis-Gaza and Anthony B. Pattison
21. A
Reviews