Reviews
Description
Part I: Shotgun Proteomics of Extracellular Vesicles and Subcellular Structures
1. Mesenchymal Stem Cell - Derived Extracellular Vesicles Isolation and their Protein Cargo Characterisation
Miriam Morente-López, Juan A. Fafián-Labora, Mónica Carrera, Francisco J. de Toro, Concha Gil, Jesús Mateos, and MarÃa C. Arufe
2. Clinical Proteomics for the Analysis of Circulating Extracellular Vesicles
Maria N. Barrachina and Ãngel GarcÃa
3. Utilization of Laser Capture Microdissection Coupled to Mass Spectrometry to Uncover the Proteome of Cellular Protrusions
Ana Gordon and Karine Gousset
Part II: Shotgun Proteomics of Non-Model Organisms
4. Isolation of Apoplastic Fluid From Woody Plants Leaves: Grapevine and Coffee as a Case Study
Andreia Figueiredo and Leonor Guerra-Guimarães
5. Shotgun Proteomics for L3 and L4 Anisakis simplex Development Stages
Robert Stryiński, Jesús Mateos, Elżbieta Lopieńska-Biernat, and Mónica Carrera
6. A Primer and Guidelines for Shotgun Proteomic Analysis in Non-Model Organisms
Angel P. Diz and Paula Sánchez-MarÃn
Part III: Clinical Proteomics
7. SWATH-MS Protocols in Human Diseases
Maria del Pilar Chantada-Vázquez, MarÃa GarcÃa Vence, Antonio Serna, Cristina Núñez C and Susana B. Bravo
8. Serum Proteomic Profiling in Rheumatoid Arthritis by Antibody Suspension Bead Arrays
LucÃa Lourido, RocÃo Paz, Cristina Ruiz-Romero, Peter Nilsson and Francisco J. Blanco
9. Human Blood Plasma Investigation Employing
2d Uplc-Udmse Data-Independent Acquisition Proteomics
Licia C. Silva-Costa, Bradley J. Smith, Pamela T. Carlson, Gustavo H. M. F. Souza, and Daniel Martins-de-Souza
10. Metaproteomics Analysis of Host-Microbiota Interfaces
Sjoerd van der Post and Liisa Arike
11. Mass Spectrometry-Based Analysis of Mycobacterial Single-Colony Proteome
John Iradukunda, Tariq Ganief, Jonathan M. Blackburn and Nelson C. Soares
12. Proteogenomic Approach for Mycobacterium Tuberculosis Investigation
Julia Bespyatykh, Georgij Arapidi, and Egor Shitikov
Part IV: Food Proteomics
13. Shotgun Proteomics for Food Microorganism DetectionAna G. Abril, Ignacio Ortea, Jorge Barros-Velázquez, Tomás G. Villa, and Pilar Calo-Mata
14. Shotgun Proteomics and Protein-Based Bioinformatics for the Characterization of Food-Derived Bioactive Peptides
Mónica Carrera, Manuel Pazos, Santiago P. Aubourg and José M. Gallardo
Part V: Analysis of Postranslational Modifications and Protein Complexes
15. FTSC-labeling Coupled with 2DE-LC-MS/MS Analysis of Complex Protein Mixtures for Identification and Relative Quantification of Tissue Carbonylome
LucÃa Méndez, Lorena Barros, Silvia Muñoz and Isabel Medina
16. Mass Spectrometry-Based Proteomics for Analysis of Hydrophilic Phosphopeptides
Chia-Feng Tsai, Jeffrey S. Smith, Dylan S. Eiger, Kendall Martin, Tao Liu, Richard D Smith, Tujin Shi, Sudarshan Rajagopal and Jon M. Jacobs
17. Rapid Shotgun Phosphoproteomics Analysis
Mónica Carrera, Benito Cañas and Daniel Lopez-Ferrer
18. System-wide Profiling Of Protein-Complexes Via Size Exclusion Chromatography-Mass Spectrometry (SEC-MS)
Fossati Andrea, Fabian Frommelt, Federico Uliana, Claudia Martelli, Matej Vizovisek, Ludovic Gillet, Collins Ben, Matthias Gst
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Part I: Shotgun Proteomics of Extracellular Vesicles and Subcellular Structures
1. Mesenchymal Stem Cell - Derived Extracellular Vesicles Isolation and their Protein Cargo Characterisation
Miriam Morente-López, Juan A. Fafián-Labora, Mónica Carrera, Francisco J. de Toro, Concha Gil, Jesús Mateos, and MarÃa C. Arufe
2. Clinical Proteomics for the Analysis of Circulating Extracellular Vesicles
Maria N. Barrachina and Ãngel GarcÃa
3. Utilization of Laser Capture Microdissection Coupled to Mass Spectrometry to Uncover the Proteome of Cellular Protrusions
Ana Gordon and Karine Gousset
Part II: Shotgun Proteomics of Non-Model Organisms
4. Isolation of Apoplastic Fluid From Woody Plants Leaves: Grapevine and Coffee as a Case Study
Andreia Figueiredo and Leonor Guerra-Guimarães
5. Shotgun Proteomics for L3 and L4 Anisakis simplex Development Stages
Robert Stryiński, Jesús Mateos, Elżbieta Lopieńska-Biernat, and Mónica Carrera
6. A Primer and Guidelines for Shotgun Proteomic Analysis in Non-Model Organisms
Angel P. Diz and Paula Sánchez-MarÃn
Part III: Clinical Proteomics
7. SWATH-MS Protocols in Human Diseases
Maria del Pilar Chantada-Vázquez, MarÃa GarcÃa Vence, Antonio Serna, Cristina Núñez C and Susana B. Bravo
8. Serum Proteomic Profiling in Rheumatoid Arthritis by Antibody Suspension Bead Arrays
LucÃa Lourido, RocÃo Paz, Cristina Ruiz-Romero, Peter Nilsson and Francisco J. Blanco
9. Human Blood Plasma Investigation Employing
2d Uplc-Udmse Data-Independent Acquisition Proteomics
Licia C. Silva-Costa, Bradley J. Smith, Pamela T. Carlson, Gustavo H. M. F. Souza, and Daniel Martins-de-Souza
10. Metaproteomics Analysis of Host-Microbiota Interfaces
Sjoerd van der Post and Liisa Arike
11. Mass Spectrometry-Based Analysis of Mycobacterial Single-Colony Proteome
John Iradukunda, Tariq Ganief, Jonathan M. Blackburn and Nelson C. Soares
12. Proteogenomic Approach for Mycobacterium Tuberculosis Investigation
Julia Bespyatykh, Georgij Arapidi, and Egor Shitikov
Part IV: Food Proteomics
13. Shotgun Proteomics for Food Microorganism DetectionAna G. Abril, Ignacio Ortea, Jorge Barros-Velázquez, Tomás G. Villa, and Pilar Calo-Mata
14. Shotgun Proteomics and Protein-Based Bioinformatics for the Characterization of Food-Derived Bioactive Peptides
Mónica Carrera, Manuel Pazos, Santiago P. Aubourg and José M. Gallardo
Part V: Analysis of Postranslational Modifications and Protein Complexes
15. FTSC-labeling Coupled with 2DE-LC-MS/MS Analysis of Complex Protein Mixtures for Identification and Relative Quantification of Tissue Carbonylome
LucÃa Méndez, Lorena Barros, Silvia Muñoz and Isabel Medina
16. Mass Spectrometry-Based Proteomics for Analysis of Hydrophilic Phosphopeptides
Chia-Feng Tsai, Jeffrey S. Smith, Dylan S. Eiger, Kendall Martin, Tao Liu, Richard D Smith, Tujin Shi, Sudarshan Rajagopal and Jon M. Jacobs
17. Rapid Shotgun Phosphoproteomics Analysis
Mónica Carrera, Benito Cañas and Daniel Lopez-Ferrer
18. System-wide Profiling Of Protein-Complexes Via Size Exclusion Chromatography-Mass Spectrometry (SEC-MS)
Fossati Andrea, Fabian Frommelt, Federico Uliana, Claudia Martelli, Matej Vizovisek, Ludovic Gillet, Collins Ben, Matthias Gst
Reviews