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Description
Preface...Table of Contents...Contributors...
Part I HTP Protocols for Plants Growing Under Controlled Conditions
1. High Throughput Screening to Examine the Dynamic of Stay Green by an Imaging System Daniel Padilla-Chacón and Cecilia B. Peña Valdivia
2. An Automated High-Throughput Phenotyping System for Marchantia polymorphaKarina Medina-Jimenez, Mario A. Arteaga-Vazquez, and Argelia Lorence
3. A Novel High-Throughput Phenotyping Hydroponic System for Nitrogen Deficiency Studies in Arabidopsis thalianaLucia M. Acosta-Gamboa, Zachary C. Campbell, Fei Gao, Benjamin Babst, and Argelia Lorence
4. Camelina sativa High-Throughput Phenotyping Under Normal and Salt Conditions Using a Plant Phenomics PlatformEmilio Vello, John Aguirre, Yang Shao, and Thomas Bureau
5. A Straightforward High-Throughput Aboveground Phenotyping Platform for Small to Medium-Sized PlantsDenise Caldwell and Anjali S. Iyer-Pascuzzi
6. Wireless Fixed Camera Network for Greenhouse-Based Plant PhenotypingNadia Shakoor and Todd C. Mockler
7. Experimental Design for Controlled Environment High-Throughput Plant PhenotypingJennifer L. Clarke, Yumou Qiu, and James C. Schnable
Part II Novel Algorithms for HTP
8. High-Throughput Extraction of Seed Traits Using Image Acquisition and AnalysisChongyuan Zhang and Sindhuja Sankaran
9. ColorQuant: A High-Throughput Technique to Extract and Quantify Color Phenotypes from Plant ImagesMao Li, Margaret H. Frank, and Zoë Migicovsky
10. Using Cameras for Precise Measurement of Two-Dimensional Plant Features: CASS Amy Tabb, Germán A. HolguÃn, and Rachel Naegele
Part III Molecular Plant Imaging
11. Positron Emission Tomography (PET) for Molecular Plant Imaging Sergey Komarov and Yuan-Chuan Tai
12. Phenotyping Complex Plant Structures with a Large Format Industrial Scale High Resolution X-Ray Tomography InstrumentKeith E. Duncan and Christopher N. Topp
Part IV HTP Protocols for Plants Growing Under Field Conditions
13. Challenges for a Massive Implementation of Phenomics in Plant Breeding ProgramsGustavo A. Lobos, Félix Estrada, Alejandro del Pozo, Sebastián Romero-Bravo, Cesar A. Astudillo, and Freddy Mora-Poblete
14. Designing Experiments for Physiological PhenomicsAddie Thompson, Michael Kantar, and Katy Rainey
15. Design Considerations for In-Field Measurement of Plant Architecture Traits Using Ground-Based PlatformsPiyush Pandey and Sierra Young
16. Design and Construction of Unmanned Ground Vehicles for Sub-Canopy Plant PhenotypingAdam Stager, Herbert G. Tanner, and Erin Sparks
17. Nighttime Chlorophyll Fluorescence Imaging of Dark-Adapted Plants Using a Robotic Field Phenotyping PlatformMaria Newcomb and Nadia Shakoor
Part V Molecular, Metabolomics, Network Analysis, and Quantitative Genetic Analysis of HTP Data
18. A Method for Rapid and Reliable Molecular Detection of Drought-Response Genes in Sorghum bicolor (L.) Moench Roots Juan B. Fontanet-Manzaneque, David Blasco-Escámez, Damiano Martignago, Andrés Rico-Medina, and Ana I. Caño-Delgado
19. High-Throughput Profiling of Metabolic Phenotypes Using High-Resolution GC-MSNishikant Wase, Nathan Abshire, and Toshihiro Obata20
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Preface...Table of Contents...Contributors...
Part I HTP Protocols for Plants Growing Under Controlled Conditions
1. High Throughput Screening to Examine the Dynamic of Stay Green by an Imaging System Daniel Padilla-Chacón and Cecilia B. Peña Valdivia
2. An Automated High-Throughput Phenotyping System for Marchantia polymorphaKarina Medina-Jimenez, Mario A. Arteaga-Vazquez, and Argelia Lorence
3. A Novel High-Throughput Phenotyping Hydroponic System for Nitrogen Deficiency Studies in Arabidopsis thalianaLucia M. Acosta-Gamboa, Zachary C. Campbell, Fei Gao, Benjamin Babst, and Argelia Lorence
4. Camelina sativa High-Throughput Phenotyping Under Normal and Salt Conditions Using a Plant Phenomics PlatformEmilio Vello, John Aguirre, Yang Shao, and Thomas Bureau
5. A Straightforward High-Throughput Aboveground Phenotyping Platform for Small to Medium-Sized PlantsDenise Caldwell and Anjali S. Iyer-Pascuzzi
6. Wireless Fixed Camera Network for Greenhouse-Based Plant PhenotypingNadia Shakoor and Todd C. Mockler
7. Experimental Design for Controlled Environment High-Throughput Plant PhenotypingJennifer L. Clarke, Yumou Qiu, and James C. Schnable
Part II Novel Algorithms for HTP
8. High-Throughput Extraction of Seed Traits Using Image Acquisition and AnalysisChongyuan Zhang and Sindhuja Sankaran
9. ColorQuant: A High-Throughput Technique to Extract and Quantify Color Phenotypes from Plant ImagesMao Li, Margaret H. Frank, and Zoë Migicovsky
10. Using Cameras for Precise Measurement of Two-Dimensional Plant Features: CASS Amy Tabb, Germán A. HolguÃn, and Rachel Naegele
Part III Molecular Plant Imaging
11. Positron Emission Tomography (PET) for Molecular Plant Imaging Sergey Komarov and Yuan-Chuan Tai
12. Phenotyping Complex Plant Structures with a Large Format Industrial Scale High Resolution X-Ray Tomography InstrumentKeith E. Duncan and Christopher N. Topp
Part IV HTP Protocols for Plants Growing Under Field Conditions
13. Challenges for a Massive Implementation of Phenomics in Plant Breeding ProgramsGustavo A. Lobos, Félix Estrada, Alejandro del Pozo, Sebastián Romero-Bravo, Cesar A. Astudillo, and Freddy Mora-Poblete
14. Designing Experiments for Physiological PhenomicsAddie Thompson, Michael Kantar, and Katy Rainey
15. Design Considerations for In-Field Measurement of Plant Architecture Traits Using Ground-Based PlatformsPiyush Pandey and Sierra Young
16. Design and Construction of Unmanned Ground Vehicles for Sub-Canopy Plant PhenotypingAdam Stager, Herbert G. Tanner, and Erin Sparks
17. Nighttime Chlorophyll Fluorescence Imaging of Dark-Adapted Plants Using a Robotic Field Phenotyping PlatformMaria Newcomb and Nadia Shakoor
Part V Molecular, Metabolomics, Network Analysis, and Quantitative Genetic Analysis of HTP Data
18. A Method for Rapid and Reliable Molecular Detection of Drought-Response Genes in Sorghum bicolor (L.) Moench Roots Juan B. Fontanet-Manzaneque, David Blasco-Escámez, Damiano Martignago, Andrés Rico-Medina, and Ana I. Caño-Delgado
19. High-Throughput Profiling of Metabolic Phenotypes Using High-Resolution GC-MSNishikant Wase, Nathan Abshire, and Toshihiro Obata20
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