Deep Sequencing Data Analysis (e-book) (used book) | bookbook.eu

Description

1. An Introduction to High-throughput Sequencing Experiments: Design and Bioinformatics Analysis

Rachelly Normand and Itai Yanai

2. Compressing Resequencing Data with GReEn ∗

Armando J. Pinho Diogo Pratas Sara P. Garcia

3. On the Accuracy of Short Read Mapping

Peter Menzel, Jes Frellsen, Mireya Plass, Simon H. Rasmussen, and Anders Krogh

4. Statistical Modeling of Coverage in High-Throughput Data

David Golan and Saharon Rosset

5. Assembly Algorithms for Deep Sequencing Data: Basics and Pitfalls

Nitzan Kol and Noam Shomron

6. Short Reads Mapping for Exome Sequencing

Xueya Zhou, Suying Bao, Binbin Wang, Xuegong Zhang, and You-Qiang Song

7. -Profiling Short Tandem Repeats from Short Reads

Melissa Gymrek and Yaniv Erlich

8. Exome Sequencing Analysis: A Guide to Disease Variant Detection

Ofer Isakov, Marie Perrone, and Noam Shomron

9. Identifying RNA Editing Sites in miRNAs by Deep Sequencing

Shahar Alon and Eli Eisenberg

10. Identifying Differential Alternative Splicing Events from RNA Sequencing Data using RNASeq-MATS

Juw Won Park, Collin Tokheim, Shihao Shen, and Yi Xing

11. Optimizing Detection of Transcription Factor Binding Sites in ChIP-seq Experiments

Aleksi Kallio and Laura L. Elo

12. Statistical Analysis of ChIP-seq Data with MOSAiCS

Guannan Sun, Dongjun Chung, Kun Liang, and Sündüz Keleș

13. Detection of Reverse Transcriptase Termination Sites using cDNA Ligation and Massive Parallel Sequencing

Lukasz J. Kielpinski, Mette Boyd, Albin Sandelin, and Jeppe Vinther