Data Mining Techniques for the Life Sciences (e-book) (used book) | bookbook.eu

Description

Part I: DATABASES

1 EBI data resources

Rolf Apweiler and Amonida Zadissa

2 IMEx databases: displaying molecular interactions into a single, standards-compliant dataset

Pablo Porras, Sandra Orchard and Luana Licata

3 Protein Three-dimensional Structure Databases

Vaishali P. Waman, Christine Orengo, Gerard J. Kleywegt and Arthur M. Lesk

Part II: PREDICTION METHODS

4 Predicting protein conformational disorder and disordered binding sites

Ketty Tamburrini, Giulia Pesce, Juliet Nilsson, Frank Gondelaud, Andrey V. Kajava, Jean-Guy Berrin and Sonia Longhi

5 Profiles of natural and designed protein-like sequences effectively bridge protein sequence gaps: Implications in distant homology detection

Gayatri Kumar, Narayanaswamy Srinivasa and Sankaran Sandhya

6 Turning failures into applications: the problem of protein ΔΔG prediction

Rita Casadio, Castrense Savojardo, Piero Fariselli, Emidio Capriotti and Pier Luigi Martelli

7 Dissecting the genome for drug response prediction

Gerardo Pepe, Chiara Carrino, Luca Parca, Manuela Helmer-Citterich

8 Prediction of the effect of pH on the aggregation and conditional folding of intrinsically disordered proteins with SolupHred and DispHred

Valentín Iglesias, Carlos Pintado-Grima, Jaime Santos, Marc Fornt and Salvador Ventura

9 Extracting the dynamic motion of proteins using Normal Mode Analysis

Jacob A. Bauer and Vladena Bauerová

Part III: DATA QUALITY

10 Pre- and Post- Publication Verification for Reproducible Data Mining in Macromolecular Crystallography

John R Helliwell

11 Soft Statistical Mechanics for Biology

Mariano Bizzarri, Alessandro Giuliani

12 Uses and abuses of the atomic displacement parameters in structural biology

13 Optimizing the Parametrization of Homologue Classification in the Pan-Genome Computation for a Bacterial Species: Case Study Streptococcus pyogenes

Erwin Tantoso, Birgit Eisenhaber and Frank Eisenhaber

Part VI: BIG DATA

14 Computational pipeline for rational drug combination screening in patient-derived cells

Paschalis Athanasiadis, Aleksandr Ianevski, Sigrid Skånland and Tero Aittokallio

15 Deep Mining from Omics Data

Abeer Alzubaidi and Jonathan Tepper